Table 3.

Comparison of performances of different methods on heterogeneous models

	SNPInterForest		BOOST		SNPHarvester
	# of true positives (Ntotal = 100)	# of false positives	# of true positives (Ntotal = 100)	# of false positives	# of true positives (Ntotal = 100)	# of false positives
h2 = 0.4, MAF = 0.2	98	1	98	5	64	0
h2 = 0.4, MAF = 0.4	98	0	100	7	66	1
h2 = 0.3, MAF = 0.2	90	1	81	6	59	0
h2 = 0.3, MAF = 0.4	80	0	100	7	62	0
h2 = 0.2, MAF = 0.2	28	4	16	10	19	0
h2 = 0.2, MAF = 0.4	38	1	78	3	29	2