Table 2.
Probe sequences for mRNAs that positively localized to Cajal bodies
| mRNA type | Probe sequence |
|---|---|
| Housekeeping genes | |
| mRNA for pectin methylesterase | 5′ ATAAACTCCTGCTTTTATATRAATTACGTATCT 3′ |
| mRNA for peroxidase (px1 gene) | 5′ GTAGTTTAAACTTGGTAGTAAGAGTCTGGAG 3′ |
| mRNA for α-tubulin (exon 1) | 5′ GATCTAGACAGAGGTCCACAATCTC 3′ |
| mRNA for α-tubulin (exon 3) | 5′ GACTTTTTACCGTAGTCCACTGAAA 3′ |
| mRNA for α-tubulin (3′ UTR fragment) | 5′ GAAGTCCAAAACAACACAATCTAAGA 3′ |
| mRNA for catalase | 5′ GTAACRTCTAAAGGATCAAAGTCATATTTATCCT 3′ |
| mRNA for ATPase | 5′ GATTCCAGAGTACAGACACATAAATAAAAAC 3′ |
| mRNA for inositol-3-phosphate synthase | 5′ CTTTTTAAGTTGAATCCTGGTACAGAG 3′ |
| snRNP mRNA | |
| mRNA for SmD1 | 5′ AGGAGTTGACATAAGTATGAATACACATCT |
| mRNA for SmD2 | 5′ CTATTCACTTTGGATTTCTAAGAACAATAAT 3′ |
| mRNA for SmD2 | 5′ GTATATAATTTCCTCTTCAAAAACTACTTTTCTCT 3′ |
| mRNA for SmE | 5′ AATACAAGGTTCATGTACTCATCAAATC 3′ |
| RNA pol II genes | |
| mRNA for RPB2 of Pol II RNA (exon 2) | 5′ GACCTAGAAATATCATAGCAGATAATTTTCTAC 3′ |
| mRNA for RPB2 of Pol II RNA (exon 3) | 5′ CTGTGGATAATAGAGTACATATGCTAAGGTAT 3′ |
| mRNA for RPB10 of Pol II RNA | 5′ GTAATTCAAAAGCTTCTCRATGAGATC 3′ |