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. 2011 Jul 28;6(2):363–383. doi: 10.1038/ismej.2011.100

Table 1. Statistical analysis of 16S rRNA gene clone libraries derived from rhizosphere samples of ‘Ca. L asiaticus'-infected or healthy citrus.

  Libraries infected
Healthy
Bulk
  IT1 IT2 IT3 HT1 HT2 HT3  
Accession numbers JF416062–JF416236 JF437361– JF437535 JN052217–JN052392 JF345348–JF345521 JN052393–JN052567 JN052568–JN052739 JN161828– JN162004
               
Statistics
 No. of sequences 175 175 176 174 175 172 177
 Library coveragea 81.2 87.6 76.2 77.2 78.3 76.6 89.3
 No. of OTUsb 71 65 84 96 96 95 54
               
Diversity indexes
 Chao1 221.1 186.4 264.3 441.23 569.2 532.2 143.2
 Shannon–Weiner diversity index 3.8 3.7 3.8 4.3 4.2 4.3 3.5

Abbreviations: ‘Ca. L. asiaticus', Candidatus Liberibacter asiaticus; OTUs, operational taxonomic units.

a

CX=(1−(nx/N)) × 100, where nx is the number of singletons that are encountered only once in a library and N the total number of clones.

b

OTUs were defined at 97% sequence identity.