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. 2012 Jan 19;7(1):e30377. doi: 10.1371/journal.pone.0030377

Table 1. Performance of gem-mappability for different parameters and genome species.

Inline graphic D.melanogast. D.melanogast.
Inline graphic = 2, Inline graphic = 36 Inline graphic = 3, Inline graphic = 75
Time Inline graphic mins Inline graphic mins
Mem. Inline graphic GB Inline graphic GB
Inline graphic H.sapiens H.sapiens H.sapiens H.sapiens H.sapiens H.sapiens
Inline graphic = 0, Inline graphic = 36 Inline graphic = 1, Inline graphic = 24 Inline graphic = 2, Inline graphic = 36 Inline graphic = 2, Inline graphic = 50 Inline graphic = 3, Inline graphic = 75 Inline graphic = 4, Inline graphic = 100
Time Inline graphic mins Inline graphic hrs Inline graphic hrs Inline graphic hrs Inline graphic hrs Inline graphic hrs
Mem. Inline graphic GB Inline graphic GB Inline graphic GB Inline graphic GB Inline graphic GB Inline graphic GB
Inline graphic H.sapiens H.sapiens H.sapiens
Inline graphic = 2, Inline graphic = 36 Inline graphic = 2, Inline graphic = 50 Inline graphic = 4, Inline graphic = 100
Time Inline graphic days Inline graphic day Inline graphic hrs
Mem. Inline graphic GB Inline graphic GB Inline graphic GB

We used 8 cores for all the tests. Wall-clock times are reported. In the lowest panel, the timings are those obtained when computing the exact mappability (i.e., with our approximation switched off).