Table 1. Primers used for single cell qPCR analysis.
Gene name and accession number | Primer name | Primer sequence (5′→3′) |
Hprt | Hprt RT | CAAGGGCATATCCAACAACA |
NM_013556 | Hprt F | GGGGGCTATAAGTTCTTTGCT |
Hprt R | GGCCTGTATCCAACACTTCG | |
Cxcr4 | CXCR4 RT | GACAAAGAGGAGGTCAGCCA |
NM_009911 | CXCR4 F | GTGCAGCAGGTAGCAGTGAA |
CXCR4 R | GGGTTCCTTGTTGGAGTCATAG | |
Vecad | VECad RT | CGGAGGGTTGTCATTCTCAT |
NM_009868 | VECad F | TGGTCACCATCAACGTCCTA |
VECad R | GCACAATGGACTCTTTCCCTAC | |
Ncad | NCad RT | AGGGTCTCCACCACTGATTCT |
NM_007664 | NCad F | ATGATCCAAATGCCCTGAAT |
NCad R | TTTGTCCGTGACAGTTAGGTTG | |
Casr | CASR RT | ATCCTGCCTGTGATGTTACG |
NM_013803 | CASR F | TATCCCCCAGGTGAGCTACG |
CASR R | GATCACTTCCACCACCTGCT | |
α4 integrin | VLA4 RT | CTTGAGAGGCGATCCACAT |
NM_010576 | VLA4 F | CACTCCAGCCGATCCTTCA |
VLA4 R | TGCAGGCAAGCTTCACTATG | |
α5 integrin | VLA5 RT | ACCTCCTGAGGTCTCCCATC |
NM_010577 | VLA5 F | ATCCTGTCCGCCACTCAA |
VLA5 R | GGTCATCTAGCCCATCTCCA | |
Lfa1 | LFA1 RT | CCAGCGTCATTCCCAAGTA |
NM_008400 | LFA1 F | AGAAGCCACCATTTCCCTCT |
LFA1 R | TGCTTGTTCGGCAGTGATAG | |
Psgl1 | PSGL1 RT | GTAGGGTCAGTGGTGGCAAT |
NM_009151 | PSGL1 F | CTGTCACTGAGGCAGAGTCGTT |
PSGL1 R | GTTCCCGGAGATGCACAG |
Note: RT primers were used for retrotranscription reaction. Forward (F) and Reverse (R) primers were used for pre-amplification and qPCR reactions. Gene accession number for each gene obtained from NCBI database (http://www.ncbi.nlm.nih.gov/nuccore) [53].