Table 3.
Dynamic range of generic real-time PCRa.
DENV in vitro RNA copies in extraction | DENV in vitro RNA copies in RT | DENV in vitro RNA copies in PCRb | IC copies in PCRb | Number positives DENV in vitro RNA (%; mean Cq-value: SD) | Number positives IC (%; mean Cq-value: S.D) |
---|---|---|---|---|---|
1.25 × 107 | 107 | 106 | 500 | 12/12 (100%; 26.59; 0.54) | 12/12 (100%; 35.82; 1.08) |
1.25 × 106 | 106 | 105 | 500 | 12/12 (100%; 30.59; 0.46) | 12/12 (100%; 32.67; 0.79) |
1.25 × 105 | 105 | 104 | 500 | 12/12 (100%; 34.35; 1.09) | 12/12 (100%; 32.97; 0.74) |
1.25 × 104 | 104 | 103 | 500 | 8/12 (66.7%; 37.22; 0.73) | 12/12 (100%; 33.73; 0.63) |
1.25 × 103 | 103 | 102 | 500 | 1/12 (8%; 40.71) | 12/12 (100%; 32.24; 0.60) |
0 | 0 | 0 | 0 | 0/12 | 0/12 |
aThe dynamic range of the generic PCR was determined on 10-fold dilution series of DENV in vitro RNA in the presence of a fixed amount of IC spiked into lysis buffer containing DENV negative human serum as background and for 12 replicates per dilution.
bNumber of copies cDNA/PCR has been calculated as 1/12.5 of the extracted RNA. assuming 100% efficiency in extraction, reverse transcription (RT), and PCR.
SD: standard deviation.