Table 1.
Nucleotide and amino acid identities of Hobi-like strain Italy-280/11-A to reference pestiviruses in informative genomic regions
| Pestivirus species | Strain | Accession no. | % nt (aa) identitya |
||
|---|---|---|---|---|---|
| E2 | 5′ UTR | Npro | |||
| Hobi-like pestivirus | Italy-1/10-1 | HQ231763 | 99.4 (98.8) | 99.4 | 98.4 (96.6) |
| Th/04_KhonKaen | FJ040215 | 87.8 (88.7) | 91.8 | 89.2 (91.3) | |
| D32/00_HoBi | AY604725 (E2); AY489116 (5′ UTR); AY735486 (Npro) | 93.6 (92.1) | 97.8 | 95.8 (97.3) | |
| CH-KaHo/cont | EU385605 (E2); AY895011 (Npro) | 94.5 (91.9) | NA | 95.8 (95.3) | |
| IZSPLV_To | HM151363 (E2); HM151361 (5′ UTR); HM151362 (Npro) | 94.5 (93.3) | 98.3 | 96.9 (96.0) | |
| Au/A55110-1162/09 | FR873802 (E2); FR873797 (5′ UTR); FR873800 (Npro) | 95.3 (95.0) | 98.9 | 96.2 (96.0) | |
| BDV | H2121 (Chamois-1) | GU270877 | 57.8 (57.4) | 62.3 | 64.0 (68.8) |
| Gifhorn | GQ902940 | 58.8 (59.1) | 66.1 | 64.9 (65.5) | |
| X818 | NC_003679 | 60.4 (58.9) | 60.7 | 66.0 (68.2) | |
| Reindeer | AF144618 | 58.5 (56.6) | 65.5 | 63.6 (64.9) | |
| CSFV | Brescia X | AY578687 | 58.8 (58.0) | 67.2 | 67.1 (69.5) |
| HCLV | AF531433 | 59.0 (58.0) | 66.1 | 65.6 (69.5) | |
| Brescia | AF091661 | 59.2 (58.6) | 66.6 | 65.4 (70.1) | |
| Alfort-A19 | U90951 | 58.9 (58.0) | 66.6 | 66.0 (70.1) | |
| Shimen/HVRI | AY775178 | 58.7 (58.9) | 66.1 | 67.4 (70.1) | |
| Riems | AY259122 | 59.5 (58.0) | 66.1 | 65.4 (69.5) | |
| Pestivirus of giraffe | H138 | AF144617 | 58.7 (57.6) | 73.4 | 64.7 (66.2) |
| BVDV-1 | ILLNC | U86600 | 60.5 (59.1) | 70.4 | 63.6 (64.9) |
| ZM-95 | AF526381 | 60.9 (61.4) | 66.3 | 63.2 (67.5) | |
| Oregon-C24V | AF091605 | 60.4 (61.3) | 69.3 | 66.0 (68.2) | |
| CP7-5A | AF220247 | 61.3 (61.9) | 68.8 | 65.6 (69.5) | |
| SD1 | M96751 | 59.6 (59.9) | 69.3 | 65.1 (68.2) | |
| Singer_Arg | DQ088995 | 61.5 (60.5) | 69.8 | 64.7 (67.5) | |
| KE9 | EF101530 | 60.5 (61.0) | 70.9 | 65.6 (67.5) | |
| NADL | M31182 | 62.4 (62.2) | 69.8 | 65.6 (68.2) | |
| VEDEVAC | AJ585412 | 61.0 (60.3) | 71.5 | 66.0 (68.8) | |
| BVDV-2 | JZ05-1 | GQ888686 | 60.4 (57.0) | 75.5 | 64.0 (65.5) |
| New York′93 | AF502399 | 59.8 (57.0) | 75.0 | 65.1 (67.5) | |
| XJ-04 | FJ527854 | 60.2 (56.1) | 75.0 | 64.0 (64.2) | |
| C413 | NC_002032 | 59.5 (56.1) | 75.0 | 64.0 (65.5) | |
| Hokudai Lab/09 | AB567658 | 60.3 (59.6) | 73.4 | 65.1 (64.2) | |
a
NA, sequence not available.