Table 3.

Sequencing of a pool of 20 bar-coded VZV genome libraries

VZV strain	Total no. of reads	No. of mapped reads	% mapped reads	No. of contigs	Total contig length (bp)	% coverage	Sequence depth (fold)	No. of gaps	Total gap length (bp)	Avg gap length (bp)
243/2000	48,752	4,332	8.9	7	117,420	99.9	15.7	6	134	22
413/2000	46,829	5,077	10.8	5	117,475	99.9	18.5	4	36	9
2308/2003	49,586	7,952	16.0	6	117,491	99.9	28.7	5	63	13
875/2004	58,477	9,514	16.3	5	117,471	99.9	34.4	4	39	10
1256/2004	51,853	2,517	4.9	9	117,199	99.7	9.5	8	324	41
3/2005	36,160	2,470	6.8	6	117,360	99.8	9.3	5	181	36
134/2005	39,313	8,465	21.5	5	117,469	99.9	30.3	4	16	4
551/2005	39,720	1,923	4.8	11	116,569	99.2	7.3	10	917	92
667/2005	42,461	1,912	4.5	8	117,184	99.7	7.2	7	354	51
1483/2005	55,072	3,399	6.2	6	117,211	99.7	12.8	5	290	58
405/2007	38,006	4,383	11.5	7	117,340	99.8	15.9	6	229	38
446/2007	38,081	10,203	26.8	4	117,482	99.9	37.1	3	22	7
1219/2007	57,213	2,686	4.7	7	117,163	99.7	11.0	6	391	65
1805/2007	49,646	3,708	7.5	7	117,367	99.8	13.7	6	151	25
1883/2007	51,247	3,350	6.5	6	117,474	99.9	12.4	5	63	13
432/2008	49,857	4,096	8.2	4	117,485	99.9	15.0	3	61	20
457/2008	43,393	1,387	3.2	23	115,394	98.2	5.3	22	2,146	98
925/2008	45,186	2,881	6.4	7	117,441	99.9	10.6	6	87	15
1002/2008	47,557	4,761	10.0	7	117,431	99.9	17.3	6	97	16
1003/2008	29,454	3,797	12.9	6	117,382	99.8	14.0	5	128	26
Mean	45,893	4,440.65	9.9	7.3	117,240	99.7	16.3	6.3	286.45	33