Table 1.

Primers used for qPCR

Primer no.	Primer name	Sequence (5′-3′)	Primer no.	Primer name	Sequence (5′-3′)
1	UL2-1_For	TCCCTCTCACTTCAACGGAC	45	IRS10_For	GTCAAGAATGGCTAAAGGGATGATA
2	UL2-1_Rev	CCTAACACATATAACGGTAAATCTT	46	IRS10_Rev	CGGTGTACAGAGTTTCAGCAGT
3	UL4-For	CGTAGGTTCCATAAATGGTTTCA	47	IRS12_For	GTTGTCGGCCCATTAACTCT
4	UL4-Rev	GCAAGCATCTGTCAAATAGCAA	48	IRS12_Rev	GGTACTGTCCTCTATCCCAATT
5	UL6-1_For	GTGTGATCTCTTAGCAGTATCAGG	49	IRS14_For	CCCTTCTGATATTGGTGGAGT
6	UL6-1_Rev	CCGTAATATGTGTTGTTCGTTGTAG	50	IRS14_Rev	GGCATTGGGAGTGGTGTCTG
7	UL8-For	ACCACATAGCTCAAATACTAGAACA	51	IRS16_For	CAGACCCTTGGAAGAACTCG
8	UL8-Rev	GGGTTCTAAATTTTCACTCGCT	52	IRS16_Rev	AAAAAGATAACATTTTAGCTACTCT
9	Ori0-For	AGAAAAAAGGTGGATTGTAATAGGC	53	IRS18_For	CCGCAGTCTAAGGGGAGAAA
10	Ori0-Rev	CGGATTTGATGGCAATCTTTTG	54	IRS18_Rev	CGGTTTCTTGGGGTAAGTAGT
11	Ori-2-For-1	ATTAATGCTGGCCGAAAGAC	55	IRS20_For	TTATTGCCCCGTACTCACCG
12	Ori-2-Rev-1	CGGATAGAATAGTACGGGGT	56	IRS20_Rev	CATTTAAAGTCTTTCCATGCCAAAC
13	Ori4A-For-1	GCGGTATAGGATAAGAGATCAC	57	IRS22_For	GTCCCCACCTCCTTTGTCTC
14	Ori4A-Rev-1	GCGAAGAAGTTCCAAACGAT	58	IRS22_Rev	GCTCCGACCTAAACTAGGGAC
15	Ori6a-For	CCCCTTATTCCTCCATAGCAC	59	IRS24_For	CCCACCACCGATACTTCCAG
16	Ori6a-Rev	TGTGGGAGAAAGTATGTCGATTT	60	IRS24_Rev	ATAAGAAGGGGAACGGTCAC
17	Ori8-For	AGAGATTGCTAGGTCGAAAGC	61	IRS26_For	CCTTTTGTGCTTAGTCGATGG
18	Ori8-Rev	TCCTTTGAGTGACGGGAAGC	62	IRS26_Rev	AATTGTGTCCTGCTGAACGA
19	Mir2-For	CGTTCGAAGCAGTGATTATTCTT	63	IRS28_For	CCCATAGCTTCGTTAACACTT
20	Mir2-Rev	TGAATTTCACTCTCCCCTCAAA	64	IRS28_Rev	GGGAGTGTGTTATCTTGTCGC
21	Mir4-For	AGTTCCATTTTTCTTACATGCTCA	65	IRS30_For	CCAGGAATACGATTTGGCTAAT
22	Mir4-Rev	GATTGGCCGTTGTAGCATAC	66	IRS30_Rev	ACGGTTCAGGGGATATGAGA
23	Mir6-For	TCAGGGCCCCAGACATCAAA	67	IRS32_For	GCCCCTAATGTACTACTTGCT
24	Mir6-Rev	CCCATGAGAAATTTTTGATAACTGA	68	IRS32_Rev	GGAGTGAAATCTTTAGGGAGGG
25	AP1-2-For-1	ACGGTTCATGACAGTTGATAAAC	69	UL30-1_For	CACACATCCTCACAATCCTCA
26	AP1-2-Rev-1	GAGCAGTCGGTTGTAACCAA	70	UL30-1_Rev	CCCAAATGCCTAGATGACAA
27	AP1-4-For-1	CCCGAACCATTAGATATCAGT	71	GAPDH_For	GTCAACGGATTTGGCCGTAT
28	AP1-4-Rev-1	ACCGTTGAAGTGATGTAATATTGAA	72	GAPDH_Rev	CCACTTGGACTTTGCCAGAGA
29	AP1-6a-2-For	ATCTAATACTTCGGAACTCCT	73	MDV072_For	AACCCAGAGATCCAAACACA
30	AP1-6a-2-Rev	AAATTTTCCTTACCGTGTAGC	74	MDV072_Rev	CGGAACCATCAAGCTCCATTTTA
31	AP1-8-For	CGACTGTAGCACTTAGAATCGC	75	pp38_For	ATTAATGCTGGCCGAAAGAC
32	AP1-8-Rev	TCCGCGTCCCAGCAATCAGG	76	pp38_Rev	CGGATAGAATAGTACGGGGT
33	AP1-10-For	ACAGGAGTTTGCATCAAAAGG	77	Meq_For	GGAGTTTGTCTACATAGTCCGT
34	AP1-10-Rev	GGTCGTGGGAATTTTCTCATATACA	78	Meq_Rev	GCCCCTCCAAACACCCCTTC
35	AP1-12-For	CCACCATCTTCTCCAACCAT	79	vIL8_For	CCACCATCTTCTCCAACCAT
36	AP1-12-Rev	GCCTTGGGTACAGCAGTTTATTAAA	80	vIL8_Rev	GCCTTGGGTACAGCAGTTTATTAAA
37	IRS2-For	CCCTAATCGGAGGTATTGATGG	81	vTR_For	CCCTAATCGGAGGTATTGATGG
38	IRS2-Rev	TAAACAGCGGGCGGAGGGAG	82	vTR_Rev	TAAACAGCGGGCGGAGGGAG
39	IRS4-For	GGGCGATAAGACACTTTCCC	83	MIR#3_For	GCGACAATCAGGACGATGTAAT
40	IRS4-Rev	TATGTGCCGGTTCCAGTGTG	84	MIR#3_Rev	GGGAAAATCTGTTGTTCCGTAG
41	IRS6_For	ACAAAACACTTACCCTCTCAACT	85	LAT_For	TTATTGCCCCGTACTCACCG
42	IRS6_Rev	CGTTCCTGATTTCCTTTCGC	86	LAT_Rev	CATTTAAAGTCTTTCCATGCCAAAC
43	IRS8_For	GCGACAATCAGGACGATGTAAT	87	UL1_For	GCCCCTAATGTACTACTTGCT
44	IRS8_Rev	GGGAAAATCTGTTGTTCCGTAG	88	UL1_Rev	GGAGTGAAATCTTTAGGGAGGG