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Male and female mice on a chow diet. Median HDL levels by genotype at cQTL peak markers with half-range of 95% confidence interval indicated in brackets, Kruskal-Wallis p-value, the corresponding R/qtl LOD score, and the genome-wide significance (permutation test p-value).
| SNP | Chr | Bp | BB | BC | CC | p-value | LOD | GW signif. |
|---|---|---|---|---|---|---|---|---|
| rs6219107 | 2 | 167167187 | 46 (4) | 46 (2) | 36 (3) | 1E-05 | 6.4 | 3E-04 |
| rs3664637 | 4 | 108062431 | 48 (3) | 45 (2) | 38 (2) | 3E-04 | 4 | 0.04 |
| rs3700385 | 9 | 44710804 | 39 (3) | 44 (2) | 53 (3) | 2E-07 | 8 | 1E-04 |
