Table 1b.
Male and female mice on a Western diet. Median HDL levels by genotype at cQTL peak markers, with half-range of 95% confidence interval indicated in brackets, Kruskal-Wallis p-value, the corresponding R/qtl LOD score, and the genome-wide significance (permutation test p-value).
| SNP | Chr | Bp | BB | BC | CC | p-value | LOD | GW signif. |
|---|---|---|---|---|---|---|---|---|
| rs3708635 | 2 | 125570240 | 76 (6) | 74 (4) | 65 (5) | 0.003 | 3.8 | 0.06 |
| rs3692104 | 2 | 161902891 | 78 (5) | 73 (4) | 64 (5) | 6.00E-05 | 5.3 | 0.003 |
| rs3700385 | 9 | 44710804 | 61 (4) | 74 (4) | 81 (5) | 5.00E-08 | 8.7 | 1E-04 |
| rs6382566 | 10 | 102218998 | 76 (7) | 75 (3) | 64 (5) | 5.00E-04 | 4 | 0.04 |
| rs6174809 | 18 | 31312897 | 78 (6) | 68 (4) | 69 (6) | 0.003 | 3.5 | 0.10 |
| rs6381950 | 18 | 61521178 | 78 (6) | 72 (4) | 62 (4) | 1.00E-04 | 4.5 | 0.01 |