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. 2012 Jan 25;7(1):e29671. doi: 10.1371/journal.pone.0029671

Table 4. Impacts of the different pathways evaluated by Gene Set Enrichment Analysis (GSEA) derived from Protein Analysis THrough Evolutionary Relationship (PANTHER).

GS Size Pathway NES NOM p-value FDR
P00005 31 Angiogenesis −1.17 0.28 0
P00027 17 Heterotrimeric G-protein signaling pathway-Gq alpha and Go alpha mediated pathway −1.16 0.28 0
P00004 42 Alzheimer disease-presenilin pathway −1.12 0.33 0.35
P00047 37 PDGF signaling pathway −1.12 0.32 0.26
P00029 37 Huntington disease −1.08 0.41 0.35
P00059 21 p53 pathway −1.06 0.43 0.31
P00006 28 Apoptosis signaling pathway −1.06 0.50 0.28
P00048 18 PI3 kinase pathway −1.04 0.46 0.27
P00031 45 Inflammation mediated by chemokine and cytokine signaling pathway −1.03 0.49 0.26
P00019 19 Endothelin signaling pathway −1.00 0.50 0.33
P00036 35 Interleukin signaling pathway −0.98 0.51 0.37
P00057 62 Wnt signaling pathway −0.98 0.54 0.34
P00052 44 TGF-beta signaling pathway −0.89 0.66 0.56
P00034 43 Integrin signalling pathway −0.89 0.68 0.53
P00012 40 Cadherin signaling pathway −0.87 0.66 0.55
P00046 22 Oxidative stress response −0.86 0.67 0.55
P00026 33 Heterotrimeric G-protein signaling pathway-Gi alpha and Gs alpha mediated pathway −0.85 0.68 0.57
P04398 28 p53 pathway feedback loops 2 −0.83 0.74 0.58
P00016 23 Cytoskeletal regulation by Rho GTPase −0.81 0.71 0.59
P00060 44 Ubiquitin proteasome pathway −0.73 0.81 0.81
P00007 16 Axon guidance mediated by semaphorins −0.67 0.87 0.90

GS, gene set; Size, numbers of miRs included; NES, nominal enrichment score; NOM p-value, nominal p-value; FDR, false discovery rate.