Table 1.
Statistics of small RNA sequences from different tomato fruit ripening stages
| Ripening stages | Reads types | Redundant | Non-redundant |
|---|---|---|---|
| Raw reads | 4,333,963 | ||
| Low quality reads | 1,562,982 | ||
| Mature green | Adaptor reads | 382,811 | |
| High quality reads(≥ 18nt) | 2,388,170 | 1,604,689 | |
| Matching the genome | 356, 350 | 141,075 | |
| rRNA/tRNA/snRNA/snoRNA matches | 65,593 | 11,177 | |
| Raw reads | 5,514,197 | ||
| Low quality reads | 1,728,593 | ||
| Breaker stage | Adaptor reads | 186,021 | |
| High quality reads(≥ 18nt) | 3,599,583 | 2,309,447 | |
| Matching the genome | 681,895 | 346,166 | |
| rRNA/tRNA/snRNA/snoRNA matches | 62,734 | 9,518 | |
| Raw reads | 5,334,158 | ||
| Low quality reads | 3,042,644 | ||
| Red Ripe stage | Adaptor reads | 17,464 | |
| High quality reads(≥ 18nt) | 2,274,050 | 1,447,762 | |
| Matching the genome | 437,520 | 220,188 | |
| rRNA/tRNA/snRNA/snoRNA matches | 29,865 | 4,750 |