Table 1. Crystallographic data and refinement statistics for NodZ complexes.
Data set | NodZ–GDP | NodZ–GDP-Fuc |
---|---|---|
Data-collection and processing statistics | ||
Beamline | SER-CAT 22-ID | SER-CAT 22-BM |
Wavelength (Å) | 1.0000 | 0.9724 |
Temperature (K) | 100 | 100 |
Space group | P6522 | P6522 |
Unit-cell parameters (Å) | ||
a | 123.9 | 128.8 |
c | 95.2 | 91.1 |
Mosaicity (°) | 0.48 | 0.70 |
Resolution range (Å) | 50.0–1.98 (2.05–1.98) | 50.0–2.35 (2.43–2.35) |
Total reflections | 300152 | 204336 |
Unique reflections | 30783 | 19190 |
Completeness (%) | 99.9 (99.9) | 99.9 (100) |
Multiplicity | 9.8 (9.4) | 10.6 (10.1) |
〈I/σ(I)〉 | 16.6 (3.7) | 20.5 (3.3) |
Rmerge† | 0.119 (0.706) | 0.091 (0.656) |
Refinement statistics | ||
Resolution (Å) | 50.0–1.98 | 50.0–2.35 |
No. of reflections, working set | 29348 | 18018 |
No. of reflections, test set | 1103 | 1030 |
R/Rfree‡ | 0.172/0.217 | 0.210/0.258 |
No. of atoms (protein/water) | 2333/199 | 2345/82 |
No. of ions (phosphate/chloride) | 3/0 | 1/1 |
R.m.s. deviation from ideal | ||
Bond lengths (Å) | 0.019 | 0.018 |
Bond angles (°) | 1.70 | 1.50 |
Average B factor (Å2) | 26.7 | 47.8 |
Ramachandran statistics (%) | ||
Most favoured regions | 93.6 | 92.6 |
Allowed regions | 6.4 | 7.4 |
PDB code | 3siw | 3six |
R merge = , where 〈I(hkl)〉 is the average intensity of reflection hkl.
R = , where F obs and F calc are the observed and calculated structure factors, respectively. R free is calculated analogously for the test reflections, which were randomly selected and excluded from the refinement.