Table 1.
Data Collection and Refinement Statistics
| Crystal | Apo-0 (NΔ33 Ddn)a | Apo-1 (NΔ30 Ddn) | Apo-2 (NΔ33 Ddn) | Holo-1 (NΔ40 Ddn + F420-ox) | Holo-2 (NΔ40 Ddn + F420-ox) | nfa33440 (+F420-ox) | nfa18080 (+F420-ox) |
|---|---|---|---|---|---|---|---|
| PDB ID code | 3R5L | 3R5P | 3R5R | 3R5W | 3R5Y | 3R5Z | |
| Data Collection | |||||||
| Space group | C2221 | C2221 | P3221 | C2 | P21 | P43 | P21 |
| Cell dimensions | |||||||
| a, b, c (Å) | 67.37, 71.01, 50.74 | 67.17, 71.04, 50.53 | 96.18, 96.18, 33.70 | 146.95, 91.71, 86.50 | 85.34, 89.42, 127.68 | 71.96, 71.96, 115.47 | 39.70, 56.94, 66.00 |
| α, β, γ (°) | 90, 90, 90 | 90, 90, 90 | 90, 90, 120 | 90, 119.53, 90 | 90, 96.29, 90 | 90, 90, 90 | 90, 105.52, 90 |
| Resolution (Å)b | 50–1.75 (1.81–1.75) | 50–1.55 (1.61–1.55) | 50–1.85 (1.92–1.85) | 50–2.10 (2.18–2.10) | 50–1.80 (1.86–1.80) | 50–1.80 (1.86–1.80) | 50–1.50 (1.55–1.50) |
| Rmergeb | 8.8 (42.5) | 9.8 (62.6) | 11.3 (57.2) | 11.2 (47.3) | 7.3 (72.2) | 8.8 (66.5) | 8.0 (47.3) |
| I/σb | 54.6 (5.7) | 27.5 (2.5) | 12.4 (1.2) | 10.7 (1.9) | 22.9 (1.6) | 28.2 (1.9) | 18.0 (1.6) |
| Complete (%)b | 99.1 (91.0) | 97.7 (99.5) | 97.9 (81.6) | 97.9 (98.1) | 97.5 (96.3) | 100 (100) | 93.5 (82.1) |
| Redundancyb | 20.6 (18.8) | 3.9 (3.3) | 5.1 (3.6) | 2.4 (2.5) | 3.1 (3.2) | 5.4 (5.4) | 2.3 (1.8) |
| Phasing | |||||||
| Number found | 2 | ||||||
| Figure of merit | 0.35 | ||||||
| Refinement | |||||||
| Resolution (Å) | 35.52–1.55 | 41.64–1.85 | 46.67–2.10 | 42.17–1.80 | 45.03–1.80 | 37.52–1.50 | |
| Number of reflections | 16,624 | 14,350 | 53,828 | 159,341 | 51,143 | 38,957 | |
| Rwork/Rfree | 18.0/21.1 | 17.1/20.3 | 22.7/26.3 | 17.3/20.6 | 17.3/21.4 | 16.6/19.2 | |
| Number of atoms | |||||||
| Protein | 942 | 927 | 4,465 | 8,790 | 4,435 | 2,261 | |
| F420 (and other) | 12 (MES) | 10 (SO42−) | 265 | 530 | 212 | 111 (SO42−) | |
| Water | 120 | 108 | 438 | 1,280 | 486 | 241 | |
| B factors (Å2)c | 24.61 | 24.63 | 22.94 | 31.01 | 29.37 | 21.34 | |
| Rmsds | |||||||
| Bond lengths (Å) | 1.734 | 1.747 | 1.039 | 1.568 | 1.131 | 1.490 | |
| Bond angles (°) | 0.015 | 0.018 | 0.006 | 0.013 | 0.008 | 0.013 | |
For descriptions of the protein constructs, see also Table S1.
Values in parentheses are for the highest-resolution shell.
Average over all atoms.