Table 1.
Raw SNP counts, mutation rates, and expected GC equilibrium values for synonymous (S), nonsynonymous (NS), and intergenic (IG) sites
Counts |
Rates |
Current GC | GCeq | |||
Number of GC → AT | Number of AT → GC | rGC→AT | rAT→GC | |||
S | 54 (43–67) | 31 (22–40) | 1.9 × 10−3 | 1.9 × 10−3 | 63 | 50 (40–58) |
NS | 40 (29–51) | 19 (12–26) | 8.0 × 10−4 | 4.9 × 10−4 | 56 | 38 (27–50) |
IG | 12 (7–19) | 6 (2–10) | 2.6 × 10−3 | 1.7 × 10−3 | 56 | 39 (17–56) |
All | 106 (89–122) | 56 (44–68) | 1.3 × 10−3 | 9.5 × 10−4 | 58 | 42 (36–49) |
Note.—The numbers in parentheses are 95% confidence intervals; significant values are bolded. The values do not sum to 167 because five SNPs did not alter the GC content (i.e., a G to C mutation).