Table 3.

Gene ontology enrichment analysis for the genes differentially expressed between WT and MT during fruit development and ripening

Category	Library pair	Enriched GO terms	Cluster frequency	P-value	Genes in group
Molecular function	WT150vsMT150	capsanthin/capsorubin synthase activity	1.2%	0.003	TC5834, TC9367
		sulfotransferase activity	1.5%	0.010	TC5490, DN620599
	WT190vsMT190	transferase activity, transferring glycosyl groups	9.3%	0.006	EY691346, TC18663, TC10188, TC8764, TC320, TC9277, TC11658, EY679857, TC24546, TC11943, TC8402, CK939135, TC15309, TC22218, EY661193
		protein N-terminus binding	1.2%	0.031	TC2476, TC10188
	WT220vsMT220	fructokinase activity	1.5%	0.019	TC9238, EY702245, TC17456
		sulfotransferase activity	1.0%	0.030	TC5490, DN620599
Biological process	WT120vsMT120	cell wall organization	5.1%	0.021	TC4981, CK933828, DN618740, EY725863, TC18738, TC3660, TC12562, EY746957, TC14614
		protein import into nucleus, docking	1.7%	0.034	EY701416, EY733548, DY305879
	WT150vsMT150	carotenoid metabolic process	3.3%	0.043	EY722043, TC15628, TC5834, TC9367