Table 1.
Oligonucleotides for miR-Q arrays.
| miRNA | RT6-'miRNA' | 'miRNA'-rev | Ref. |
|---|---|---|---|
| let-7a | tgtcaggcaaccgtattcaccgtgagtggtaactat | cgtcagatgtccgagtagagggggaacggcgtgaggtagtaggttgtata | [9] |
| let-7b | tgtcaggcaaccgtattcaccgtgagtggtaaccac | cgtcagatgtccgagtagagggggaacggcgtgaggtagtaggttgtgtg | [9] |
| let-7c | tgtcaggcaaccgtattcaccgtgagtggtaaccat | cgtcagatgtccgagtagagggggaacggcgtgaggtagtaggttgtatg | [9] |
| let-7e | tgtcaggcaaccgtattcaccgtgagtggtaactat | cgtcagatgtccgagtagagggggaacggcgtgaggtaggaggttgt | [8] |
| let-7f | tgtcaggcaaccgtattcaccgtgagtggtactata | cgtcagatgtccgagtagagggggaacggcgtgaggtagtagattgtat | This study |
| miR-103a | tgtcaggcaaccgtattcaccgtgagtggttcatag | cgtcagatgtccgagtagagggggaacggcgagcagcattgtacaggg | [17] |
| miR-106a | tgtcaggcaaccgtattcaccgtgagtggttacctg | cgtcagatgtccgagtagagggggaacggcgaaaagtgcttacagtg | This study |
| miR-141 | tgtcaggcaaccgtattcaccgtgagtggtccatct | cgtcagatgtccgagtagagggggaacggcgtaacactgtctggtaaag | [9] |
| miR-143 | tgtcaggcaaccgtattcaccgtgagtggttgagct | cgtcagatgtccgagtagagggggaacggcgtgagatgaagcactgt | This study |
| miR-145 | tgtcaggcaaccgtattcaccgtgagtggtaaggga | cgtcagatgtccgagtagagggggaacggcggtccagttttcccaggaa | [9] |
| miR-146a | tgtcaggcaaccgtattcaccgtgagtggtaaccca | cgtcagatgtccgagtagagggggaacggcgtgagaactgaattcca | [8] |
| miR-146b-5p | tgtcaggcaaccgtattcaccgtgagtggtagccta | cgtcagatgtccgagtagagggggaacggcgtgagaactgaattccata | [8] |
| miR-148a | tgtcaggcaaccgtattcaccgtgagtggtacaaag | cgtcagatgtccgagtagagggggaacggcgtcagtgcactacagaa | This study |
| miR-155 | tgtcaggcaaccgtattcaccgtgagtggtacccct | cgtcagatgtccgagtagagggggaacggcgttaatgctaatcgtgat | [8] |
| miR-15b | tgtcaggcaaccgtattcaccgtgagtggttgtaaa | cgtcagatgtccgagtagagggggaacggcgtagcagcacatcatggttt | This study |
| miR-16 | tgtcaggcaaccgtattcaccgtgagtggtcgccaa | cgtcagatgtccgagtagagggggaacggcgtagcagcacgtaaata | [9] |
| miR-181a | tgtcaggcaaccgtattcaccgtgagtggtcaccga | cgtcagatgtccgagtagagggggaacggcgaacattcaacgctg | [9] |
| miR-191 | tgtcaggcaaccgtattcaccgtgagtggtagctgc | cgtcagatgtccgagtagagggggaacggcgcaacggaatcccaaaa | This study |
| miR-200c | tgtcaggcaaccgtattcaccgtgagtggtccatca | cgtcagatgtccgagtagagggggaacggcgtaatactgccgggtaa | [9] |
| miR-21 | tgtcaggcaaccgtattcaccgtgagtggttcaaca | cgtcagatgtccgagtagagggggaacggcgtagcttatcagactga | [9] |
| miR-214 | tgtcaggcaaccgtattcaccgtgagtggtactgcc | cgtcagatgtccgagtagagggggaacggcgacagcaggcacagacagg | This study |
| miR-222 | tgtcaggcaaccgtattcaccgtgagtggtgagacc | cgtcagatgtccgagtagagggggaacggcgagctacatctggctactg | This study |
| miR-22-3p | tgtcaggcaaccgtattcaccgtgagtggtacagtt | cgtcagatgtccgagtagagggggaacggcgaagctgccagttgaagaac | This study |
| miR-23b | tgtcaggcaaccgtattcaccgtgagtgctggtaat | cgtcagatgtccgagtagagggggaacggcgatcacattgccaggg | [9] |
| miR-24 | tgtcaggcaaccgtattcaccgtgagtggtctgttc | cgtcagatgtccgagtagagggggaacggcgtggctcagttcagcag | [9] |
| miR-27a | tgtcaggcaaccgtattcaccgtgagtggtgcggaa | cgtcagatgtccgagtagagggggaacggcgttcacagtggctaag | [9] |
| miR-296-3p | tgtcaggcaaccgtattcaccgtgagtggtaggarag | cgtcagatgtccgagtagagggggaacggcggagggttgggtggaggc | This study |
| miR-29a | tgtcaggcaaccgtattcaccgtgagtggttaaccg | cgtcagatgtccgagtagagggggaacggcgtagcaccatctgaaatcgg | [8] |
| miR-29b | tgtcaggcaaccgtattcaccgtgagtggtaacact | cgtcagatgtccgagtagagggggaacggcgtagcaccatttgaaatcagt | This study |
| miR-29c | tgtcaggcaaccgtattcaccgtgagtggttaaccg | cgtcagatgtccgagtagagggggaacggcgtagcaccatttgaaatcgg | This study |
| miR-30a | tgtcaggcaaccgtattcaccgtgagtggtcttcca | cgtcagatgtccgagtagagggggaacggcgtgtaaacatcctcgactgg | This study |
| miR-30b | tgtcaggcaaccgtattcaccgtgagtggtagctga | cgtcagatgtccgagtagagggggaacggcgtgtaaacatcctacactca | This study |
| miR-30c | tgtcaggcaaccgtattcaccgtgagtggtgctgag | cgtcagatgtccgagtagagggggaacggcgtgtaaacatcctacactctc | This study |
| miR-326 | tgtcaggcaaccgtattcaccgtgagtggtctggag | cgtcagatgtccgagtagagggggaacggcgcctctgggcccttc | [9] |
| miR-371-5p | tgtcaggcaaccgtattcaccgtgagtggtagtgcc | cgtcagatgtccgagtagagggggaacggcgactcaaactgtggg | This study |
| miR-423-3p | tgtcaggcaaccgtattcaccgtgagtggttgaggg | cgtcagatgtccgagtagagggggaacggcgagctcggtctgaggc | [9] |
| miR-451 | tgtcaggcaaccgtattcaccgtgagtggtaaactc | cgtcagatgtccgagtagagggggaacggcgaaaccgttaccattactgag | [9] |
| miR-484 | tgtcaggcaaccgtattcaccgtgagtggtatcggg | cgtcagatgtccgagtagagggggaacggcgtcaggctcagtcccct | [9] |
| miR-886-5p | tgtcaggcaaccgtattcaccgtgagtggtccgctt | cgtcagatgtccgagtagagggggaacggcgcgggtcggagttagctc | [8] |
| RNU6 | tgtcaggcaaccgtattcaccaaaaatat | cgtcagatgtccgagtagagggtgctcgcttcggcagc | This study |
| SNORD44 | tgtcaggcaaccgtattcaccagtcag | cgtcagatgtccgagtagaggcctggatgatgataagcaaatg | This study |
| SNORD47 | tgtcaggcaaccgtattcaccaacctc | cgtcagatgtccgagtagaggaaccaatgatgtaatgattctgc | This study |
| SNORD48 | tgtcaggcaaccgtattcaccggtcag | cgtcagatgtccgagtagaggagtgatgatgaccccaggta | This study |
| SNORD52 | tgtcaggcaaccgtattcacctcagaa | cgtcagatgtccgagtagagggggaatgatgatttcacagact | This study |
The table comprises oligonucleotides for reverse transcription (RT6-'miRNA') as well as the specific primers for qPCR detection ('miRNA'-rev). MiRNA-specific nucleotides are indicated in bold letters, while binding sites of terminal primers (MP-fw: tgtcaggcaaccgtattcacc and MP-rev: cgtcagatgtccgagtagagg) are indicated in italic.