Table 2.
Estimation of SomaticSniper precision
Sample | Tumor type | Filter | Target regions | Assays designed | Successful assays | Validated | Maximal sensitivity, % | Precision, % |
---|---|---|---|---|---|---|---|---|
933 124 | AML | Standard | 1018 | 1000 | 930 | 384 | 100 | 37.7 |
933 124 | AML | Standard + review | 1018 | 1000 | 930 | 376 | 100 | 36.9 |
933 124 | AML | Additional | 493 | 486 | 480 | 372 | 98.9 | 75.5 |
16 319 | Breast | Standard | 5578 | 5542 | 5499 | 4702 | 100.00 | 84.30 |
16 319 | Breast | Additional | 5290 | 5273 | 5243 | 4689 | 99.72 | 88.64 |
16 347 | Breast | Standard | 860 | 841 | 818 | 546 | 100.00 | 63.49 |
16 347 | Breast | Additional | 684 | 678 | 667 | 545 | 99.82 | 79.68 |
16 454 | Breast | Standard | 2430 | 2401 | 2346 | 1798 | 100.00 | 73.99 |
16 454 | Breast | Additional | 2117 | 2103 | 2073 | 1775 | 98.72 | 83.85 |