Table 1.

Carolina Breast Cancer Study and SCORE GWAS “hit” allele frequencies as compared to HapMap CEPH Europeans (CEU) and African Yorubans (YRI).

	SNP	Gene or region	Risk allele	YRI allele frequency	CEU allele frequency	CBCS allele frequency		SCORE allele frequency
						African American	European American	African American	European American
CBCS	rs2981582	FGFR2	C	0.49	0.54	0.53	0.59
	rs1219648		A	0.54	0.54	0.57	0.59
	rs2420946		C	0.40	0.54	0.48	0.59
	rs11200014		G	0.76	0.53	0.80	0.57
	rs2981579		C	0.33	0.54	0.40	0.57
	rs2162540		A	0.43	0.55	0.49	0.59
	rs3135718		A	0.37	0.57	0.44	0.59
	rs2936870		C	0.36	0.58	0.43	0.58
	rs2912774		C	0.38	0.54	0.44	0.58
	rs1896395		C	0.75	1.00	0.80	0.99
	rs13281615	8q24	A	0.57	0.54	0.56	0.58
SCORE	rs1447295	8q24	C	0.61	0.93			0.70	0.99
	rs4242384		A	0.82	0.93			0.84	0.90
	rs16901979		C	0.46	0.98			0.55	0.95
	rs10486567	JAZF1	C	0.10	0.75			0.73	0.78
	rs7920517	MSMB	G	0.19	0.42			0.72	0.51
	rs10993994		T	0.29	0.34			0.63	0.45
	rs7904463		C	0.27	0.62			0.33	0.66
	rs10740051		G	0.94	0.66			0.89	0.70
	rs10826223		G	0.86	0.91			0.88	0.92