Table 2.
Calculation time of each measurement.
| Method | RAF | CLUSTAL W | ||
|---|---|---|---|---|
| Time | Total time | Time | Total time | |
| C-SCI | 0.965 ± 1.65 | 3.05 ± 7.35 | 0.979 ± 1.67 | 1.01 ± 1.71 |
| C-BPD (consensus) |
0.948 ± 1.63 | 3.03 ± 7.33 | 0.961 ± 1.65 | 0.989 ± 1.69 |
| C-BPD (pairwise) |
0.267 ± 0.444 | 2.35 ± 6.67 | 0.268 ± 0.444 | 0.295 ± 0.477 |
| SCI | 0.157 ± 0.270 | 2.24 ± 6.56 | 0.159 ± 0.273 | 0.187 ± 0.306 |
| BPD (consensus) |
0.182 ± 0.881 | 2.27 ± 6.61 | 0.159 ± 0.274 | 0.186 ± 0.307 |
| BPD (pairwise) |
0.095 ± 0.158 | 2.18 ± 6.51 | 0.111 ± 0.809 | 0.138 ± 0.817 |
The result of calculation time is shown in seconds. Time: elapsed time for calculating the measurement only. Total time: total elapsed time for aligning sequences and calculating the measurement. All the experiments were executed on a Linux machine with AMD Opteron 2200SE (2.8 GHz).