Table 4.
The classification of ncRNAs in intronic and intergenic regions.
| Sample | Cerebrum | Testis | ES cell |
|---|---|---|---|
| Intron RNAs | 15,973 (2865243, 100%)3 | 12,866 (1,583,086, 100%) | 1,952 (108,833, 100%) |
| Antisense RNAs1 | 141 (4,347, 0.15%) | 156 (12,829, 0.81%) | 19 (626, 0.58%) |
| Small ncRNAs1 | 14,196 (1,781,616, 62.18%) | 10,483 (764,884, 48.32%) | 1,467 (30,496, 28.02%) |
| Long ncRNAs1 | 1,636 (1,079,280, 37.67%) | 2,227 (80,5373, 50.87%) | 466 (77,711, 71.40%) |
| Intergenic RNAs | 12,445 (11,077,673, 100%) | 13,199 (2,212,637, 100%) | 4,963 (193,861, 100%) |
| Antisense RNAs2 | 2,614 (792,653, 7.16%) | 2,756 (440,655, 19.92%) | 732 (27,289, 14.08%) |
| Small ncRNAs2 | 6,502 (9,716,663, 87.71%) | 5,072 (624,312, 28.22%) | 2,271 (27,232, 14.05%) |
| Long ncRNAs2 | 3,329 (568,357, 5.13%) | 5,371 (1,147,670, 51.86%) | 1,960 (139,340, 71.87%) |
1These ncRNAs are intronic. 2These ncRNAs are intergenic. 3The numbers are those of the identified regions. The numbers in the parentheses are the read number of a region and its rate over all reads in the regions.