Table 3.
Variant and Repeat Densities in the Region Spanning the Origin Relocation and in the Rest of the Blochmannia vafer Genome
| Variant Density |
Repeat Density |
||||||||
| SNPs/kb | Indels/kb | Indels/kb igsa | Number of SSRsb/kb igsa | Number of Multimeric SSRsc/kb igsa | Number of Homopolymers/kb igsa |
||||
| ≥6 nt |
<6 nt |
||||||||
| A/T | C/G | A/T | C/G | ||||||
| 31.5-kb region | 0.636 | 0.286 | 0.907 | 206.6 | 5.2 | 6.9 | 0.2 | 176.7 | 17.6 |
| Rest of genome | 0.524 | 0.041 | 0.220 | 204.4 | 6.2 | 6.0 | 0.1 | 175.7 | 16.4 |
a
igs indicates intergenic sequence.
b
SSRs with repeat units of 1–5 nt (includes homopolymers and multimeric SSRs).
c
Multimeric SSRs with repeat units of 2–5 nt.