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. 2012 Jan 30;7(1):e31057. doi: 10.1371/journal.pone.0031057

Table 3. Performance comparisons for eukaryotic protein subcellular location prediction method based on the iLoc8897 dataset.

Subcellular location Euk-mPLoc 2.0 (2010) (Chou and Shen 2010) iLoc-Euk (2011) (Chou et al. 2011) LIBSVM KNN The proposed method
Jackknife Jackknife Jackknife Jackknife Jackknife
Accuracy (%) Accuracy (%) Accuracy (%) MCC Accuracy (%) MCC Accuracy (%) MCC
Acrosome 7.14 7.14 57.14 0.8526 71.43 0.8449 64.29 0.8659
Cell membrane 64.85 80.49 84.52 0.9123 96.67 0.8558 85.09 0.9121
Cell wall 12.24 16.33 91.84 0.8750 85.71 0.8981 91.84 0.8750
Centrosome 22.92 69.79 86.17 0.8650 92.55 0.6513 88.30 0.8688
Chloroplast 82.60 87.79 99.73 0.9943 99.73 0.9873 99.73 0.9943
Cyanelle 59.49 64.56 100.00 1.0000 98.73 1.0000 100.00 1.0000
Cytoplasm 64.87 76.72 45.24 0.9399 90.34 0.8198 45.70 0.9361
Cytoskeleton 31.65 27.34 50.36 0.7629 6.47 0.8318 49.64 0.7640
Endoplasmic reticulum 76.15 89.06 87.72 0.9529 84.65 0.9457 87.72 0.9542
Endosome 4.88 7.32 21.95 0.7272 19.51 0.8163 21.95 0.7497
Extracell 81.87 90.46 91.82 0.9812 88.64 0.9902 91.92 0.9824
Golgi apparatus 22.05 63.39 76.59 0.8997 46.83 0.9633 77.38 0.9131
Hydrogenosome 20.00 0.00 100.00 1.0000 70.00 1.0000 100.00 1.0000
Lysosome 45.61 31.58 87.72 0.8813 57.89 0.9851 87.72 0.8813
Melanosome 0.00 2.13 76.60 0.9474 14.89 1.0000 76.60 0.9474
Microsome 7.69 0.00 69.23 0.8579 15.38 1.0000 69.23 0.8579
Mitochondrion 70.00 77.05 78.03 0.9749 80.66 0.9688 78.20 0.9750
Nucleus 64.70 87.93 93.69 0.8865 50.65 0.9943 93.60 0.8873
Peroxisome 50.91 54.55 100.00 0.9650 74.55 1.0000 100.00 0.9650
Spindle pole body 33.82 66.18 95.59 0.9110 4.41 1.0000 95.59 0.9181
Synapse 0.00 38.30 80.85 0.7918 25.53 0.8399 80.85 0.7918
Vacuole 59.41 71.76 95.88 0.9399 80.59 0.9819 93.53 0.9606
Overall accuracy 64.17 79.06 78.01 - 74.70 - 78.17 -
Inline graphic - 71.27 75.54 - 72.84 - 75.64 -