Table 2.
For each genomic sequence fragment (contig) containing VSGs, the number of each VSG type is listed. To compute a p-value indicating a significant co-localization of same-type VSGs, the average distance between VSGs encoding the same N-terminal type was compared to simulated repertoires in which the type labels were permuted. Two of the contigs examined have same-type VSGs occurring significantly close and are highlighted; the others did not show significant co-localization of same-type VSGs.
| Name of Contig (chr= chromosome) |
Number of VSGs |
Number of N1,N2,N3,N4 and N5 types |
p value for a smaller than expected average distance between same-type VSGs based on 100k permutations |
|---|---|---|---|
| 27P2_V3 | 35 | 6,11,1,17,0 | 0.73867 |
| Tb927_01_v4 (chr 1) | 5 | 0,1,0,3,1 | 0.66382 |
| Tb927_02_v4 (chr 2) | 9 | 1,1,0,6,1 | 0.77749 |
| Tb927_03_v4 (chr 3) | 34 | 10,10,0,14,0 | 0.37428 |
| Tb927_04_v4 (chr 4) | 29 | 7,8,3,11,0 | 0.00925 |
| Tb927_05_v4 (chr 5) | 63 | 8,21,2,29,3 | 0.63349 |
| Tb927_06_v4 (chr 6) | 46 | 13,10,2,20,1 | 0.40205 |
| Tb927_07_v4 (chr 7) | 9 | 0,3,0,5,1 | 0.65537 |
| Tb927_08_v4 (chr 8) | 30 | 6,5,2,14,2 | 0.84335 |
| Tb927_09_v4 (chr 9) | 196 | 39,50,15,81,11 | 0.30494 |
| Tb927_10_v4 (chr 10) | 26 | 4,6,2,12,2 | 0.05658 |
| Tb927_11_01_v4 (chr 11) | 116 | 32,18,8,54,4 | 0.77996 |
| Tb927_11_02_v4 (chr 11) | 60 | 7,27,8,26,2 | 0.73117 |
| Tryp_IXb-217g08.q1c | 6 | 0,1,1,4,0 | 0.83799 |
| Tryp_IXb-218d07.p1c | 29 | 5,5,0,17,2 | 0.30265 |
| Tryp_IXb-68a05.p2k3050 | 13 | 0,2,4,2,5 | 0.03094 |
| Tryp_X-254c10.q1c | 16 | 3,5,1,6,1 | 0.10299 |
| Tryp_X-302f11.q1ca | 9 | 0,2,0,7,0 | 0.65412 |
| Tryp_X-324h11.p1k | 24 | 6,6,0,12,0 | 0.14332 |