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. 2011 Dec 22;52(1):255–259. doi: 10.1021/ci200289s

Figure 1.

Figure 1

JGromacs classes and multiple levels of data represented: (A) structures and trajectories, (B) sequences and alignments, (C) atomic index sets and MD frame index sets. Blue circles depict different levels of information; green pentagons depict Java classes. Arrows between circles show hierarchical relationships, while arrows between circles and pentagons indicate mapping between data and JGromacs objects.