Table 4.

PMS5 on real datasets: predicting transcript factor-binding sites

Dataset	Best motif found by PMS5	Matched binding sites at:
mus05r	AGAGGAAAAAAAAAAGGAGAG	seq 1: GGAAAAACAAAGGTAATG
mus07r	GCTGCCCACCCTCTGCAACCC	seq 4: CCCAACACCTGCTGCCTGAGCC
mus11r	AGGGCGGGGGGCGGAGCGGGG	seq 2: GCCGCCGGGGTGGGGCTGAG
		seq 3: GGGGGGGGGGGCGGGGC
		seq 4: GTGGGGGCGGGGCCTT
		seq 9: GAACAGGAAGTGAGGCGG
hm03r	AAAAGAAAAAAAAATAAACAA	seq 1: CGGGTGTTATTCAAGCAAAAAAAATAAATAAATACCTATGCAATAC
		seq 2: GGATGTTACACAAGCAAACAAAATAAATATCTGTGCAATAT
		seq 3: TGGGTGTTATATGAGCAAACAAAATAAATACCTGTGCAACAT
hm08r	CAGCGTGCAGTCCCCTTCATC	seq 10: TATGGTCATGACGTCTGACAGAGC
hm19r	CCCCCTTCCACCACCCACAGA	seq 2: CACTTTTAGCTCCTCCCCCCA
hm20r	CCTCCTTCCTCCCCCTCCCCC	seq 10: TCCTCCCCACCTTCCCCACCCTCCCCACCCTCCCCATAAGCGCCCCTCCCG
		seq 11: GCAAACTCCGCCTCCCCCAA
		seq 14: GTCCCTCCTCCTCCCGCCC
hm22r	GGACACGGCAGAGCCTGGGGA	seq 4: GAGGCAGACCACGTGAGAGCCTGGCCAGGCCTTCC
hm24r	CGCCTGCGCCCCGCCCCGCCC	seq 2: CCCCGCCCCGCGCTCCCC
hm26r	CCCCCCGCCTCCCGCTCCCAG	seq 3: CCCCGCCTCAGGCTCCCGGGG
		seq 7: CTCAGCCTGCCCCTCCCAGGGATTAAG
		seq 8: GCGCCGAGGCGTCCCCGAGGCGC