Table 2.
Computation times for enumerating all tryptic compositions up to the length of 30, for different sets of jobs and number of work processes, with and without the maximum mass limit
| Task | Number of Workers |
Job Table | Computation Time | |||||
|---|---|---|---|---|---|---|---|---|
|
Number of Jobs |
start | L max,2 | L max,3 | L max,4 | massMax = 3 kDa | no massMax | ||
| L = 30 | 1 | 1 | 1 | - | - | - | 6 h 03 min | 35 h 11 min |
| 5 | 30 | 2 | - | - | - | 2 h 12 min | 14 h 52 min | |
| 30 | 30 | 2 | - | - | - | 1 h 39 min | 13 h 32 min | |
| 30 | 255 | ≤ 3 | 20 | - | - | 28 min | 5 h 02 min | |
| 71 | 255 | ≤ 3 | 20 | - | - | 27 min | 4 h 57 min | |
| 71 | 679 | ≤ 5 | 20 | 24 | 28 | 11 min | 1 h 20 min | |
Computations were done using 71 work processes executed on a cluster with 12 Intel Xeon X5650 CPUs running Windows HPC Server 2008.