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. 2004 Feb;14(2):209–220. doi: 10.1101/gr.1524804

Table 1A.

The Most Abundantly Represented Transcripts in the S. Stercoralis cDNA Libraries

Non-redundant GenBank
ESTs from library
Cluster ESTs per cluster L1 L3i Best identity descriptor Accession SW/TRa E-value C. elegans Gene Wormpep
1 SS00012.cl 1097 8 1089 S. stercoralis IGG immunoreactive antigen O44394 6e-91 F54B11.2b
2 SS00013.cl 234 4 230 Crithidia fasciculata MURF-2 protein Q34096 5e-06 —
3 SS00010.cl 159 1 158 Podocoryne carnea POD-EPPT, pod-EPPT protein Q25677 2e-31 T05A10.1b
4 SS00028.cl 136 0 136 Zea mays HRGP, hydroxyproline-rich glycoprotein Q41814 3e-18 Y22D7AR1b
5 SS01581.cl 131 0 131 novel — — —
6 SS01580.cl 129 6 123 S. stercoralis L3NIEAG.01 Q9UA16 3e-40 C07A4.3b
SS00064.cl 56 0 56 S. stercoralis L2NIEAG.01 Q9UA16 3e-141 C07A4.3b
SS01574.cl 48 2 46 S. stercoralis L3NIEAG.01 Q9UA16 1e-40 C07A4.3b
7 SS01578.cl 109 101 8 novel — — —
8 SS01394.cl 96 19 77 Anisakis simplex troponin-like protein Q9U3U5 7e-99 F54C1.7b
9 SS01577.cl 70 0 70 C. elegans HCH-1, metalloprotease Q21059 2e-53 F40E10.1
SS01564.cl 38 0 38 C. elegans HCH-1, metalloprotease Q21059 2e-52 F40E10.1
10 SS01515.cl 49 47 2 C. elegans ADP/ATP carrier protein O45865 8e-178 T27E9.1
11 SS00004.cl 49 48 1 C. elegans 60S acidic ribosomal protein Q93572 2e-146 F25H2.10
12 SS01616.cl 43 0 43 novel — — —
13 SS01569.cl 42 26 16 Necator americanus calreticulin precursor O76961 1e-185 Y38A10A.5b
14 SS00165.cl 42 36 6 Onchocerca volvulus disulfide isomerase precursor Q25598 4e-209 C07A12.4b
15 SS01567.cl 40 37 3 C. elegans 40S ribosomal protein S8 P48156 3e-88 F42C5.8
16 SS01566.cl 39 22 17 Loa loa SXP-1, immunodominant hypodermal antigen Q9GU97 1e-05 —
17 SS01565.cl 39 2 37 C. elegans trehalase precursor Q22195 3e-94 T05A12.2
18 SS01563.cl 38 38 0 C. elegans ACT-4, actin 4 P10986 1e-241 M03F4.2
19 SS01562.cl 37 19 18 C. elegans EF-1-ALPHA, elongation factor 1-alpha P53013 4e-186 F31E3.5
20 SS01355.cl 35 19 16 C. elegans FTT-2, 14-3-3 like protein Q20665 9e-131 F52D10.3A
21 SS00503.cl 35 33 2 C. elegans COX1, cytochrome C oxidase polypeptide I P24893 5e-108 —
22 SS00069.cl 34 34 0 C. elegans COL-34, cuticular collagen Q20087 6e-154 F36A4.10
23 SS01559.cl 33 27 6 C. elegans RPL-4, ribosomal protein L1 O02056 4e-141 B0041.4
24 SS00810.cl 32 25 7 C. elegans RPS-9, ribosomal protein S9 Q20228 6e-97 F40F8.10
25 SS01557.cl 31 0 31 C. elegans EGL-3, prohormone convertase 2 Q10575 5e-120 C51E3.7A
a

SW/TR is SWISS-PROT and TrEMBL Proteinknowledgebase (http://us.expasy.org/sprot/)

b

C. elegans homolog present but with a lower probability match than the best GenBank descriptor