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. 2004 Feb;14(2):209–220. doi: 10.1101/gr.1524804

Table 1B.

Abundantly Represented L1-Specific Transcriptsa

Nonredundant GenBank
Cluster ESTs per cluster Best identity descriptor Accession SW/TRb E-value C. elegans gene wormpep
1 SS00001.cl 26 C. elegans COL-6, cuticle collagen 6 P18831 5e-134 ZK1290.3
2 SS01536.cl 22 C. elegans arginine kinase Q10454 1e-145 F46H5.3
3 SS01533.cl 21 Brugia pahangi HSP 90, heat shock protein 90 O61998 6e-234 C47E8.5c
4 SS01520.cl 18 C. elegans H3, histone 3 Q10453 8e-81 F45E1.6
5 SS00723.cl 16 C. elegans 40S ribosomal protein S16 Q22054 2e-58 T01C3.6
6 SS01504.cl 15 C. elegans UNC-54, myosin heavy chain O02244 2e-220 F11C3.3
7 SS00026.cl 15 Monodelphis domestica ribosomal protein S4 Y isoform O62739 7e-90 Y43B11AR.4c
8 SS01498.cl 14 C. elegans COL-10, cuticle collagen 10 Q17460 1e-124 B0222.8
9 SS01492.cl 14 C. elegans cuticle collagen Q20778 8e-29 F54D8.1
10 SS01490.cl 14 C. elegans COL-1, cuticle collagen 1 Q19763 1e-134 F23H12.4
a

Note: The two largest L1-specific clusters appear in Table 1A

b

SW/TR is SWISS-PROT and TrEMBL Proteinknowledgebase (http://us.expasy.org/sprot/)

c

C. elegans homolog present but with a lower probability match than the best GenBank descriptor