Table 4.
Genes and rs numbers | Testing balanced accuracya | Cross validation consistencyb | P valuec |
---|---|---|---|
MTHFD1_rs2236225 | 0.4442 | 4/10 | 0.9980 |
MTR_rs1805087, TCN2_rs1801198 | 0.5181 | 5/10 | 0.7260 |
MTHFD1_rs2236225, TCN2_rs1801198, BHMT2_rs625879 | 0.4852 | 7/10 | 0.9480 |
MTHFR_rs1801133, MTR_rs1805087, MTRR_rs1801394, BHMT2_rs526264 | 0.5074 | 5/10 | 0.8130 |
aTesting balanced accuracy of classification of cases and controls in the testing dataset calculated as (Sensitivity + Specificity)/2
bCross validation consistency is the number of times the model was selected as the best model after tenfold cross validation runs
cSignificance of accuracy, empirical P value based on 1,000 permutations