Table 2.

Amino acid replacement dependent on nucleotide replacement. The replacement goes from identical to incompatible (nucleotide replacement in bold). Abbreviations used here: Nucleotides: C: cytosine, A: adenine, G: guanine, T: thymine. Amino acids: V: valine (Val), I: isoleucine (Ile), L: leucine (Leu), F: phenylalanine (Phe), D: aspartic acid (Asp), E: glutamic acid (Glu), Q: glutamine (Gln), R: arginine (Arg), K: lysine (Lys), S: serine (Ser), P: proline (Pro), C: cysteine (Cys), Y: tyrosine (Tyr). Sbjct: Subject.

Identical	Equivalent	Borderline	Incompatible
Query: AGT	Query: GAG	Query: TCT	Query: GAG
Sbjct: TCT	Sbjct: GAC	Sbjct: TAT	Sbjct: GTG
Query: S	Query: E	Query: S	Query: E
Sbjct: S	Sbjct: D	Sbjct: Y	Sbjct: V
Query: AGG	Query: AGG	Query: CAA	Query: TAC
Sbjct: CGG	Sbjct: AAG	Sbjct: AAA	Sbjct: TGC
Query: R	Query: R	Query: Q	Query: Y
Sbjct: R	Sbjct: K	Sbjct: K	Sbjct: C
Query: CTG	Query: ATT	Query: TTC	Query: CGG
Sbjct: TTG	Sbjct: CTT	Sbjct: TGC	Sbjct: CCG
Query: L	Query: I	Query: F	Query: R
Sbjct: L	Sbjct: L	Sbjct: C	Sbjct: P