. 2011 Dec 6;119(4):1018–1028. doi: 10.1182/blood-2011-06-363887

Table 1.

Categories of genes differentially expressed

Category	Gene^*
Apoptosis/antiapoptosis	*Bmi1,^†^‡Bcl1a,^†^‡Bcl2l1,^†Dap,^†Tlr4,^†Tradd,^†Xiap*^†
Cancer	Dpt,^†*Spp1,^§Tgfb2,^†Malat1,^†Mta3*^†
Cell adhesion	Emb,^†*Enah,^†Postn*^†^‡
Chemokines/receptors	Ccl2,^†^‡Ccl6,^†*Ccl8,^†Ccl9,^†Ccl11,^†^‡Ccl24,^‡Cxcl1,^†^‡Cxcl5,^†Cxcl12,^†Cxxc5*^†
Collagens	Col3a1,^†Col6a1^†
Cyclins	*Ccnb1,^†Ccnb2,^†Ccnd2,^†Ccng2,^†Cdkn1b*^†
Cytoskeleton	Gsn,^†S100a10^†
Growth factors/receptors	Csf1r,^†Gpr137,^†^‡*Igf1,^†Igf2,^†Igf2r,^†Il2rg,^†^‡Jund,^†Kitl,^†Lifr,^†^‡Ndn,^†Notch2,^†Notch3,^†Pdgfra,^†Trf,^†Trfc*^†^‡
Immune cells	Fcgr3,^†IgA,^†^‡Igj,^†^‡IgG,^†^‡*Igh6, Igk,^†Igl,^†^‡Klra17,^†^‡Lcp1,^†Ly6d,^†Mpeg1,^†Slamf9,^†^‡Tmpa,^†^‡Vpreb3*^†
Inflammation/macrophages	*Cat,^†^‡Cd163,^†^‡Fcgr3,^†^‡Il1l1,^†^‡Ptger4,^†^‡Ptgs2,^‡Sod1*,^†^‡
Oncogenes/tumor suppressors	Brca1,^†^‡*Cebpd,^†^‡Crk,^†Csk,^†Dek,^†Extl2,^†^‡Fos,^‡Jund,^†Mela,^†^‡Serpini1*^†
Proteases/inhibitors	Ctsc,^†^‡Klk1,^†Serpini1,^†Timp2^†
Signal transduction	Dkk1,^†^‡Grb2z,^†^‡*Mapk8,^†^‡Map3k7,^†Map4k4,^†Mxi1,^†Ppap2a,^†Ppap2b,^†Prkcz,^†Rb,^†Smad 6,^†Smad7,^†Smoc1,^†Socs2,^†^‡Tgfb2,^†Tgfbr22*
Transcription/translation	*Cited2,^†^‡Cebpd,^†^‡Egr1,^†^‡Eif2ak3,^†Eif4e3,^†Prpf19,^†^‡Sdpr,^†Sp12*

Bold type indicates genes found in study 1 or 2, using both ANOVA and BETR analysis. BETR indicates Baysean estimation of temporal regulation; PC, plasma cell; and OG, oil granuloma.

Light, normal type indicates genes found in study 1 or 2, using ANOVA.

^†

Gene was detected in the PC samples.

^‡

Gene was detected in the OG samples.

^§

Spp1 was detected in studies 1 and 2, using both ANOVA and BETR analysis.