Table II.
TRD tested on selected QTLs identified by composite interval mapping and epistatic analysis
| QTL (Chromosome) | Line × A. arenosa | Marker | No. of Offspring Tested | P | Allele with Higher Frequencya | Fold Overrepresentation |
| OMC (1) | F1 | MSAT1.3 | 95 | nsb | None | ns |
| MGC (1) | F1 | T27K12 | 95 | ns | None | ns |
| FEE (1) | F1 | nga692 | 95 | ns | None | ns |
| HRP (2) | F1 | MSAT2.28c | 95 | 1.7E-07 | C24 | 3.32 |
| FOE (2) | F1 | nga361 | 95 | 1.0E-10 | C24 | 4.75 |
| FOE (2) | NIL7 F1 | MSAT2.11 | 54 | 0.001 | C24 | 2.38 |
| FOE (2) | NIL18 F1 | II.38 | 60 | 0.02 | C24 | 1.86 |
| FOE (2) | F1 | nga168c | 94 | 6.1E-10 | C24 | 4.53 |
| OVN (2) | F1 | MSAT2.33c | 95 | 5.4E-08 | C24 | 3.52 |
| MUF (3) | F1 | NGA172 | 95 | ns | None | ns |
| FII (3) | F1 | GAPAbc | 94 | 0.002 | Col-0 | 1.94 |
| FII (3) | NIL21 F1 | III.56 | 231 | 1.8E-10 | Col-0 | 2.45 |
| FII (3) | NIL22 F1 | III.55 | 282 | 3.0E-18 | Col-0 | 3.48 |
| FII (3) | NIL23 F1 | III.55 | 306 | 1.5E-7 | Col-0 | 1.86 |
| OGR (4) | F1 | MSAT4.19 | 95 | ns | None | ns |
| BSK (5) | F1 | CTR1 | 95 | ns | None | ns |
| GLD (5) | F1 | MSAT5.19 | 95 | 0.006 | C24 | 1.79 |
a
The genotype of the preferentially transmitted allele is indicated.
b
ns, Nonsignificant.
c
See Supplemental Table S5 for controls (F1 × Col-0) for selected significantly distorted markers.