Table 1. Small RNAs that were differentially expressed in PA14 biofilms.
| PA14 locus | log2 fold changeb | |||||
| gene namea | start | end | strand | P-12 | B-24 | B-48 |
| upregulated in biofilms | ||||||
| P1 | 334549 | 334728 | - | 1.48 | ||
| RsmY | 586867 | 586990 | + | 5.15 | 2.41 | 5.81 |
| P9 | 1436491 | 1436618 | - | 1.59 | ||
| 4.5 S RNA (ffs) | 1668911 | 1669081 | - | 2.56 | 5.01 | 5.23 |
| sRNA1059 | 1996807 | 1997508 | ? | 4.47 | 4.14 | |
| sRNA1466 | 2918212 | 2918965 | ? | 2.35 | ||
| RgsA | 3318747 | 3318868 | - | 5.80 | 3.21 | 10.44 |
| sRNA1714 | 3360654 | 3360873 | - | 1.79 | 3.20 | |
| amiE leader | 3778034 | 3778133 | + | 3.65 | 3.00 | |
| RsmZ | 4057543 | 4057658 | + | 5.21 | 2.23 | 5.89 |
| sRNA2315 | 4536493 | 4536919 | + | 1.38 | ||
| sRNA2626 | 5196833 | 5197184 | + | 3.21 | 2.32 | |
| PrrH | 5283995 | 5284319 | + | 12.08 | 6.50 | 10.37 |
| PrrF1 | 5283995 | 5284110 | + | 8.83 | 5.21 | 7.04 |
| PrrF2 | 5284207 | 5284319 | + | 12.45 | 6.62 | 10.58 |
| crcZ | 5308587 | 5308993 | + | 3.56 | 2.87 | |
| P30 | 5308743 | 5308964 | - | 4.88 | ||
| P32 | 5344950 | 5345060 | - | 1.25 | 2.23 | |
| P34 | 5835082 | 5835480 | - | 1.94 | 3.16 | |
| 6 S RNA (ssrS) | 5884320 | 5884502 | + | 2.36 | 4.48 | 4.85 |
| downregulated in biofilms | ||||||
| sRNA622 | 1140860 | 1141267 | - | −2.54 | −3.65 | |
| PhrS | 3705309 | 3705521 | + | 1.28 | −1.74 | |
| 72/101 | 4939194 | 4939277 | - | −2.14 | ||
| P26 | 4780768 | 4780833 | + | −1.23 | ||
a
: annotation taken from Sonnleitner et al.
b
: relative to P-4, only at least +/− 1 log2-fold regulated genes with a P-value < = 0.001 are shown.