Table 2.
Summary of statistics (means with standard errors estimated through jackknifing) of contigs produced by de novo assembly of 454-sequencing reads from normalised and unnormalised transcriptome libraries.
| Blood | Spleen | |||
|---|---|---|---|---|
| Normalised | Unnormalised | Normalised | Unnormalised | |
| Number of sampled reads | 29500 (0) | 29500 (0) | 45800 (0) | 45800 (0) |
| Number of assembled reads | 13998 (89.0) | 20703 (25.9) | 15980 (29.6) | 22487 (23.3) |
| Number of contigs in assembly | 3221 (6.1) | 1240 (7.4) | 3487 (12.8) | 2078 (10.6) |
| Mean contig length | 413.7 (0.8) | 501.6 (1.8) | 385.7 (0.6) | 455.2 (1.2) |
| Maximum contig length | 2014 (105) | 4777 (240) | 1428 (15) | 3117 (54) |
| Mean number of reads per contig | 4.7 (0) | 13.4 (0.2) | 4.7 (0.05) | 14.2 (0.3) |
| Maximum number of reads per contig | 48 (1.1) | 1944 (108.2) | 230 (3.8) | 1944 (165.8) |
| Number of transcripts detected | 1184 (5.3) | 586 (14.7) | 1238 (5.9) | 924 (6.0) |
| Mean number of reads per transcript | 7.1 (0.04) | 23.9 (0.6) | 6.6 (0.03) | 22.0 (0.5) |