Table 1.
Primers used in the study
| Primer | Sequence (5′→3′) |
|---|---|
| csdA-RT-qPCR-left | GTGATGTTGGCGAGATGGAG |
| csdA-RT-qPCR-right | ATCGTTGAGTGGGAAGCAAA |
| 16S-RT-qPCR-left | GCTCGTGTTGTGAAATGTTGG |
| 16S-RT-qPCR-right | TATGTGGTCCGCTGGCTCT |
| csdA483-484-IBS | AAAAAAGCTTATAATTATCCTTACATGCCCAGCATGTGCGCCCAGATAGGGTG |
| csdA483-484-EBS1d | CAGATTGTACAAATGTGGTGATAACAGATAAGTCCAGCATTTTAACTTACCTTTCTTTGT |
| csdA483-484-EBS2 | TGAACGCAAGTTTCTAATTTCGGTTGCATGTCGATAGAGGAAAGTGTCT |
| EBS universal | CGAAATTAGAAACTTGCGTTCAGTAAAC |
| T7 | TAATACGACTCACTATAGGG |
| csdA483-484-flank-left | TTGTTGTTGGTACCCCAGGT |
| csdA483-484-flank-right | AGAGAACAACGCGGTCTGAT |
| csdA1548-1549-IBS | AAAAAAGCTTATAATTATCCTTAGTTGACGTTCGCGTGCGCCCAGATAGGGTG |
| csdA1548-1549-EBS1d | CAGATTGTACAAATGTGGTGATAACAGATAAGTCGTTCGCCATAACTTACCTTTCTTTGT |
| csdA1548-1549-EBS2 | TGAACGCAAGTTTCTAATTTCGATTTCAACTCGATAGAGGAAAGTGTCT |
| csdA1578-1579-IBS | AAAAAAGCTTATAATTATCCTTAGCTGCCGATATCGTGCGCCCAGATAGGGTG |
| csdA1578-1579-EBS1d | CAGATTGTACAAATGTGGTGATAACAGATAAGTCGATATCACTAACTTACCTTTCTTTGT |
| csdA1578-1579-EBS2 | TGAACGCAAGTTTCTAATTTCGATTGCAGCTCGATAGAGGAAAGTGTCT |
| csdA-flank-left | TTCTGCTGATAGCCGTGATG |
| csdA-flank-right | CCGATATAACGGCTGCTGAT |
| Ninv-left (20) | TAAGGGTACTATCGCGGCGGA |
| Ninv-right (20) | CGTGAAATTAACCGTCACACT |
| KvirF-left (16) | TCGTGGCAGCTATGCTGTTC |
| KvirF-right (16) | ATACGTCGCTCGCTTATCCA |
| Intron-left | TGGCAATGATAGCGAAACAA |
| Intron-right | GGTACCGCCTTGTTCACATT |
| csdANotI | GGCGCGCGGCCGCAAAAATCGGACAGAGGGCAA |
| csdAXhoI | GGCCGCTCGAGTTATGCATCACCGAAGCGA |
| csdA1 | GCTTGAAACCTCTTTTGCTGA |
| csdA3 | GAAAGATGGCCGTCTGGATA |
| csdA5 | ACGATTGAACTGCCAAAAGG |
| RP | TTTCACACAGGAAACAGCTATGAC |