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. 2011 Nov 28;40(3):e19. doi: 10.1093/nar/gkr1085

Table 2.

Oligonucleotide primers used in this work

Primer and description Sequence
1 lacZp upstream 5′-GGAGACATUCGGGCAGTGAGCGCAACG-3′
2 LacZ downstream 5′-GGGAAAGUGAAAAAGAATAAACCGAACATCCA-3′
3 lacZ upstream (short translation signal) 5′-GGGAAAGUCACAGGAGGGACGTCATGACCATGATTACGGATTCAC-3′
4 lacZ upstream with (long translation signal) 5′-GGAGACATUCATAACAATTTCACACAGGAGGGACGTCATG ACCATGATTACGGATTCAC-3′
5 fnuDIIM upstream with (long translation signal) 5′-GGAGACATUCATAACAATTTCACACAGGAGGGACGTCATG AAAATTAAAGAAAAACGAG-3′
6 fnuDIIM downstream 5′-GGGAAAGUTTAATCTGTTTCTTTTTTAAAATATAG-3′
7 attTn7 upstream 5′-AATCTGTAACGTTCCGGGTTC-3′
8 attTn7 downstream 5′-CATTAATAACGAAGAGATGAC-3′

Note. Primers 1–6 include upstream (5′-GGAGACATU) or downstream (5′-GGGAAAGU) sequences needed for subsequent USER cloning. The 3′-end of primer 1 anneals 133 bp upstream of lacZ ATG; the 3′-end of primer 2 anneals 80 bp downstream of lacZ stop codon TAA; primers 3 and 4 to 17 nucleotides of lacZ open reading frame beginning with ATG; primer 5 anneals to 22 nucleotides of fnuDIIM gene starting at ATG; primer 6 anneals to 26 nucleotides downstream of fnuDIIM gene ending at stop codon TAA. Translation initiation signals are italicised. Primers 7 and 8 flank the glmS terminator, into which the mini-Tn7 (mTn7) inserts.