Table 2.
Primer and description | Sequence | |
---|---|---|
1 | lacZp upstream | 5′-GGAGACATUCGGGCAGTGAGCGCAACG-3′ |
2 | LacZ downstream | 5′-GGGAAAGUGAAAAAGAATAAACCGAACATCCA-3′ |
3 | lacZ upstream (short translation signal) | 5′-GGGAAAGUCACAGGAGGGACGTCATGACCATGATTACGGATTCAC-3′ |
4 | lacZ upstream with (long translation signal) | 5′-GGAGACATUCATAACAATTTCACACAGGAGGGACGTCATG ACCATGATTACGGATTCAC-3′ |
5 | fnuDIIM upstream with (long translation signal) | 5′-GGAGACATUCATAACAATTTCACACAGGAGGGACGTCATG AAAATTAAAGAAAAACGAG-3′ |
6 | fnuDIIM downstream | 5′-GGGAAAGUTTAATCTGTTTCTTTTTTAAAATATAG-3′ |
7 | attTn7 upstream | 5′-AATCTGTAACGTTCCGGGTTC-3′ |
8 | attTn7 downstream | 5′-CATTAATAACGAAGAGATGAC-3′ |
Note. Primers 1–6 include upstream (5′-GGAGACATU) or downstream (5′-GGGAAAGU) sequences needed for subsequent USER cloning. The 3′-end of primer 1 anneals 133 bp upstream of lacZ ATG; the 3′-end of primer 2 anneals 80 bp downstream of lacZ stop codon TAA; primers 3 and 4 to 17 nucleotides of lacZ open reading frame beginning with ATG; primer 5 anneals to 22 nucleotides of fnuDIIM gene starting at ATG; primer 6 anneals to 26 nucleotides downstream of fnuDIIM gene ending at stop codon TAA. Translation initiation signals are italicised. Primers 7 and 8 flank the glmS terminator, into which the mini-Tn7 (mTn7) inserts.