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. 2011 Oct 18;40(3):1345–1355. doi: 10.1093/nar/gkr833

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — (A) UV melting profile (black) compared to base stacking energy calculated from REMD simulations (gray), (B) NMR (closed) and REMD (open) relative order parameters suggest central polyadenine residues are more ordered with flexible terminal ends, (C) NMR ¹³C spin relaxation R₂/R₁ values, with HYDRONMR-predicted values assuming an order parameter (S²) of 0.45 shown as a gray bar, (D) REMD-calculated order parameters.