Table 2. Average of misclassification rates over 100 runs of GFSMLP using the selected propensity (η = 0.2, μ = 0, n = 15, number of iterations = 2,000).
Data setsPropensities | AAP872 | ABCpred | BCPred | Combo |
1. Hydrophilicity (Parker) | 9.43±0.79 | 5.46±0.77 | 6.63±0.60 | 14.02±0.86 |
2. Accessibility (Emini) | 8.87±0.70 | 4.79±0.48 | 6.09±0.49 | 13.24±0.74 |
3. Flexibility (Karplus) | 10.01±0.84 | 5.34±0.66 | 6.99±0.74 | 14.50±1.03 |
4. Surface Exposed Scale (Janin) | 15.80±2.67 | 6.72±1.05 | 8.68±1.05 | 20.31±1.93 |
5. Polarity (Ponnuswamy) | 19.78±1.75 | 16.59±2.97 | 13.07±1.84 | 24.10±2.43 |
6. Turns (Pellequer) | 23.49±2.25 | 11.24±2.08 | 16.25±2.64 | 26.37±2.06 |
7. Antigenicity (Kolaskar) | 11.00±1.28 | 5.84±0.62 | 8.06±0.96 | 16.96±1.29 |
8. Beta-turn (Chou) | 8.40±0.60 | 4.53±0.45 | 6.05±0.52 | 12.67±0.66 |