Table 4 . Allele imbalance overall and separated by sex (n = 6,579).

	FDR < 0.05	FDR < 0.1	FDR < 0.2
Both sexes	2013	2453	3004
Male	1657	2028	2497
Female	923	1384	1899

AI was tested for male and female samples alone and combined. Results from different significance cutoffs (FDR < 0.05, 0.1, and 0.2) are shown. The numbers of probe sets with a significant AI effect are reported. There are large proportions of genes that have significant AI in male samples, female samples, and combined (male/female) samples.