Table 3.

Performance of PerM with simulated datasets considering the new parameters

Dataset	Mapper	Time (min)	Map locations	Reads mapped (%)
Set 1	PerM	9	46 854 056	100
Set 2	PerM	6	17 290 574	100
Set 3	PerM	6	24 525 864	100

Reads are simulated from human reference genome build 35 (chromosome 1). Set 1: no errors; Set 2: color errors; Set 3: substitutions.