Table 3. Initial concentrations of non-anchored molecule species in the simulation.
| Molecule | General Cytosol (nM) |
| Ca | 58.7 |
| CaOut | 2005230.1 |
| Calbindin | 145508.3 |
| CalbindinCa | 14329.0 |
| Da | 10.0 |
| Da_ext | 1000000.4 |
| ATP | 1998350.8 |
| cAMP | 35.6 |
| PDE1 | 3125.4 |
| PDE1CamCa4 | 855.5 |
| PDE10 | 800.6 |
| PDE10cAMP | 118.3 |
| pPDE10 | 364.3 |
| pPDE10cAMP | 34.0 |
| AMP | 606.0 |
| CamCa2 | 341.9 |
| Cam | 4921.5 |
| PP2BCam | 2359.2 |
| PP2BCamCa2 | 1218.4 |
| PP2BCamCa4 | 8.1 |
| CaMKII | 11318.4 |
| CaMKIIpCamCa4 | 140.0 |
| CaMKIIp | 500.0 |
| CaMKIIpPP1 | 242.7 |
| CaMKIIpCamCa4PP1 | 8.1 |
| PP1 | 3750.0 |
| PKA | 1000.0 |
| PKAcAMP2 | 160.0 |
| PKAcAMP4 | 25.0 |
| PKAc | 50.0 |
| PKAr | 25.0 |
| PP2A_BPR72 | 800.0 |
| PP2A_B56d | 630.0 |
| DARPP32 | 36400.0 |
| p34-DARPP32-PP1 | 650.0 |
| p34-DARPP32-PP1-PP2A_B56d | 11.3 |
| Cdk5 | 1088.6 |
| CDK5-DARPP32 | 2057.7 |
| p75-DARPP32 | 10370.9 |
| p75-DARPP32-PP2A_BPR72 | 200.0 |
| p75-DARPP32-PP2A_B56d | 200.0 |
| p75-DARPP32-CaPP2A | 25.0 |
| p75-DARPP32-pPP2A | 120.0 |
| pPP2A | 140.0 |
| CaPP2A | 33.0 |
Molecules not listed have initial concentrations of 0. A single molecule produces a concentration of 28 nM in the dendrite subvolumes of the morphology; thus molecule concentrations less than 28 nM indicate that some subvolumes contained a single molecule and some did not, to produce the indicated concentration averaged over the entire morphology. General cytosol means that molecules populated the entire morphology.
*Molecules initialized in the dendrite submembrane are specified in picoMoles per µm2 (picoSD).
#
Molecules initialized in the spine cytosol were excluded from the PSD.