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Average number of peptides observed in trypsin (shaded bars) and lysed cell (open bars) conditions for proteins with the highest trypsin/lysed ratios. Across four biological replicates, TherJR_2595, TherJR_2582, and TherJR_1061 were found to have significantly more peptides in trypsin-shaved samples compared with lysed cell samples. *P < 0.05, Student's two-tailed T-test.
