Table 1.
Transposable elements packaged by FHV and NωV VLPs
| Transposable element | Type | FHV VLPs (n = 1,366,828) | Directionality | NωV VLPs (n = 333,787) | Directionality |
| R1 Retrotransposon | non-LTR Class I | 998,378 | 0.99 | 9,053 | 0.99 |
| Mag Retrotransposon | LTR Class I | 188,041 | 0.95 | 1,173 | 0.97 |
| Taguchi | non-LTR Class I | 92,059 | 0.63 | 2,870 | 0.63 |
| Mariner | Class II | 29,658 | 0.96 | 318,591 | 1.0 |
| Kabuki | LTR Class I | 15,512 | 0.8 | 1,367 | 0.88 |
| RTE | non-LTR Class I | 7,905 | 0.68 | ND | — |
| Jockey | non-LTR Class I | 5,831 | 0.58 | ND | — |
| Pao | LTR Class I | 5,520 | 0.83 | 733 | 1.0 |
| Gypsy | LTR Class I | 4,134 | 0.84 | ND | — |
| Piggy-Bac | Class II | 3,772 | 1.0 | ND | — |
| Others unassigned* | — | 16,018 | — | — | — |
FHV and NωV VLPs package a range of transposable elements encompassing all three classes of transposon. The numbers of aligned reads from the FHVVLP-RNAseq and NωVVLP-RNAseq datasets are indicated for each transposable element. ND, not detected.
*See Dataset S2 and Dataset S3 for further details.