Table 2.
Transposable elements packaged by FHV virions with > 1,000 reads
| Transposable element | Type | No. reads (n = 89,559) | Directionality | Copies in Dm Genome* |
| ′1731′ | LTR Class I | 56,740 | 0.99 | 2† |
| Gypsy | LTR Class I | 4,894 | 0.52 | 6 |
| Springer | LTR Class I | 4,540 | 0.71 | 11 |
| Copia | LTR Class I | 3,853 | 0.98 | 30 |
| 3S18 | LTR Class I | 3,388 | 0.88 | 6 |
| Max-element | LTR Class I | 1,871 | 0.97 | — |
| Diver | LTR Class I | 1,826 | 0.50 | 9 |
| 297 | LTR Class I | 1,341 | 0.81 | 57 |
| < 1,000 reads‡ | — | 11,106 | — | — |
FHV virions package a range of transposable elements. The number of aligned reads from the FHVvirion-RNAseq dataset is indicated for each transposable element.
*Taken from ref. 27.
†Transposon ′1731′ is known to be highly duplicated in cell lines (28).
‡See Dataset S4 for further details.