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Comparison of ProteinProphet, IDPicker, and Barista against independent experimental assays. All of the results are reported on the set of proteins that received probabilities greater than 0 from ProteinProphet. Each panel plots for Barista and ProteinProphet the number of true positive proteins as a function of the total number of identified proteins, where true positive proteins are those confirmed by alternative experimental methods, as described in the text.
