Table 1.

Alignment accuracy compared to BWA using simulated reads

	BWA		BarraCUDA
	Gap enabled	Gap disabled	Gap enabled	Gap disabled
Single-end
% Mapped	89.95	91.01	91.42	91.14
% Error	0.06	0.04	0.05	0.05
Paired-end
% Mapped	96.53	96.50	96.61	96.64
% Error	0.04	0.04	0.06	0.06