Table 1. Microarray datasets used as training and validation sets.
Contributors | Year | Set | Microarray platform | # Patients with ovarian tumor | # Patient with high grade, late stage, serous ovarian tumor | PMID | Source |
Bentink et al.[This study] | 2011 | Training | Illumina DASL BeadArray 12k | 129 | 129 | E-MTAB-386 | |
Dressman et al. [5] | 2007 | Validation | Affymetrix GeneChip HG-U133A | 118 | 114 | 17290060 | http://data.cgt.duke.edu/platinum.php |
Yoshihara et al. [36] | 2010 | Validation | Agilent G4112A | 110 | 43 | 20300634 | GSE17260 |
Tothill et al. [10] | 2008 | Validation | Affymetrix GeneChip HG-U133A | 285 | 139 | 18698038 | GSE9899 |
Birrer et al. Bonome et al. [37] | 2008 | Validation | Affymetrix GeneChip HG-U133A | 185 | 185 | 18593951 | GSE26712 |
TCGATCGA [12] | 2011 | Validation | Affymetrix GeneChip HG-U133A | 510 | 402 | 21720365 | http://tcga-data.nci.nih.gov/tcga/tcgaHome2.jsp |
Spentzos et al. [9] | 2004 | Validation | Affymetrix GeneChip HG-U95v2 | 53 | 41 | 15505275 | GSE19161 |
Zhang et al. [38] | 2008 | Validation | Affymetrix GeneChip HG-U133PLUS2 | 55 | 46 | 18458333 | GSE19161 |
Denkert et al. [26] | 2009 | Validation | Affymetrix GeneChip HG-U133A | 80 | 41 | 19294737 | GSE14764 |
Crijns et al. [39] | 2009 | Validation | Operon human v3 35K | 157 | 85 | 19192944 | GSE13876 |
Mok et al. [40] | 2009 | Validation | Affymetrix GeneChip HG-U133PLUS2 | 53 | 53 | 19962670 | GSE18520 |