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. 2011 Oct 31;29(3):1019–1029. doi: 10.1093/molbev/msr271

Table 2.

Alignment of Most Similar Sequences with YD Repeats from Monosiga brevicollis Teneurina

M. brevicollis
Syntrophobacter fumaroxidansb 		YDVDGQLTQVLEDGAEVESYSYDVNGNRVAWNVRG---AAHSATYGADDA
YDSLGRLLAVRLDGVPAEEYRYDVNGNRVEETNTPRGIIGRTSTYSEEDH
** *:* * **. .*.* ******** .     .:::**. :*
M. brevicollis
S. fumaroxidans 		VFTVDGQSYAVDVDGFLTSVRG----MSLAYSGRGELLSATLPSGAGTVR
LLTSGGTVYRYDADGFLTTRTEGSAVTRYVYSSRGELLSVALPDGK-RIE
::* .* * *.*****: .**.******.:**.* :.
M. brevicollis
S. fumaroxidans 		YRYDGFGRRI
YVNDPLGRRI 46% identical/69% similar
* * :****
M. brevicollis
Desulfococcus oleovoransc 		YDVDGQLTQVLEDGAEVESYSYDVNGN-----RVAWNVRGAAHSATYGAD
YDEMGRLETVTKDGTLVESYSYDSTPYGTCTYQMNTLRGIAGRVLDYDAE
** *:* * :**: *******. :: *.: *.*:
M. brevicollis
D. oleovorans 		DAVFTVDGQSYAVDVDGFLTSVRG----MSLAYSGRGELLSATLPSGAGT
DHLLSAGGTDYQYDLDGFLTSKTSGAETTYYDYSSRGELLSVDLPDGT-D
* :::..* .* *:******. **.******. * *.*:
M. brevicollis
D. oleovorans 		VRYRYDGFGRRI
ITYVHDPLGRRI 43% identical/67% similar:
* :* :****
M. brevicollis
Homo sapiens Ten-4		 YDVDGQLTQVLEDGAEVESYSYDVNGNRVAWNVRGAAHS--ATYGADDAV
YDADGQLQTVSINDKPLWRYSYDLNGNLHLLSPGNSARLTPLRYDIRDRI
**.**** * :. : ****:***. .:*: *. * :
M. brevicollis
H. sapiens Ten-4		 FTVDGQSYAVDVDGFLTSVRGMSLAYSGRGELLSATLPSGAGTVRYRYDG
TRLGDVQYKMDEDGFLRQRGGDIFEYNSAGLLIKAYNRAGSWSVRYRYDG:
.. .* :* **** . * : *.. * *:.* :*: :*******
M. brevicollis FGRRI
LGRRV
      38% identical/63% similar
:***:
a

As determined by tBLASTn with aa2276–aa2379 of M. brevicollis teneurin against the NCBI Nucleotide Collection database and aligned with ClustalW 2.1.

b

YD protein from genomic sequence CP000478 (4941818–4942148).

c

YD protein from genomic sequence CP000859 (1374170–1373806).